Selected Projects I've Built
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CONSULT
MedTech, Medical Imaging
The Connectivity-based Neurosurgical Toolkit provides a groundbreaking way for neurosurgeons to avoid causing permanent partial blindness during temporalobectomy surgeries. I overcame widespread struggle to clinically identify certain structures by stepping back & finding novel, intuitive, ways to use the basic algorithms used in diffusion MRI.
Design, All Technical Development, Clinical Testing, Funding
Python, Bash, C#/.NET, C++, Unit Testing, Open-CL (GPU)
Algorithm Development, Advanced Diffusion MRI, Other Medical Data
Musink
Traditional Software Development
Musink is a sophisticated desktop application that integrates with secure web services. It has over 150k users & has been profitable for more than ten years. Musink & its services possess a clean architecture & total close to 400k lines of code.
Conception, Design, All development
.NET, C#, WPF, JS/CSS/HTML, Azure, Cloudflare, Stripe, RESTful APIs, CI/CD, Unit & Integration Testing
Unsupervised Learning, SQL-Server / SQLite / Azure-SQL Databases, AWS S3, BI Analytics, Protocol Buffers, Proprietary Data Formats
Flip Proof
MedTech, Medical Imaging
Flip Proof is an open-source medical image processing framework for high-risk applications, like surgical planning. Flip Proof possesses a novel architecture that makes it virtually impossible to introduce errors that affect the orientation of medical images. It is GPU enabled for performance & heavily tested to ensure patient safety.
Conception, Architectural Design, All Development
Novel Software Architecture, C#/.NET, Iron Python, C++, PyTorch, GitHub Workflows, Unit Testing
Medical Imaging Data, including "From-Scratch" IO libraries for DICOM & NIfTI formats
AI Courses
Data Science
NDAs in EffectA series of educational AI courses for a multinational & tertiary education institute covering most mainstream ML methods - from logistic regression through to deep learning. As a consultant I helped design the courses & managed a small internationally distributed team writing & building them.
Team Management, Writing, Coding, Course design
Jupyter Notebooks, Python, TensorFlow, ScikitLearn, Statsmodels
Logistic Regression, SVMs, Deep Learning, Unsupervised Learning
Business Intelligence Gathering With AI
Data Science
NDA in EffectMy client needed to profile a diverse & complex customer base to both understand customer needs & match individuals to optimal service providers. I built a data capture & profiling scheme that both referred customers to ideal services & continually trained itself based on incoming data. I also provided deep statistical analyses for the team for future data collection schemes.
Launched, IP Owned by the Client
All Technical Development, Statistical Analyses, CI/CD
Python, Scikit Learn, Statsmodels, SQL, REST-APIs, Unit Testing, AWS
Text, numerical, & location data; Random Forests; Unsupervised Learning
Deep Brain Stimulation Neurosurgery Targeting
MedTech, Medical Imaging
We translated research-stage technology to allow neurosurgeons to implant brain electrodes in near-invisible structures with high precision. This work required translating MRI sequences to clinical hardware & developing complex data-analysis pipelines that integrated with hospital IT systems. This was was conducted at the University of California, San Francisco, one of the world's best-ranked neurosurgical hospitals.
In beta: supervised clinical use
Project scoping, system architecture, MR sequence tuning, all programming
Algorithm Development, Containerisation (Docker, Apptainer), C#/.NET, Python, Bash, Julia, PyTorch, Unit Testing
Medical Image Processing including QSM, fMRI, DTI, DICOM/PACS, Deep Learning, HIPAA
In Silico Trial Modelling Platform
MedTech, Backend
ELEM's Virtual Humans predictive modelling platform allows clients to run supercomputer-based in-silico trials to assess drug & device cardiac safety. I helped design and implement the framework and infrastructure that allows users to launch, analyse, and compare these in-silico clinical trials, including 3D videos of cardiovascular models in action.
Product design, project management; backend web development; team management; data & AI strategy; frontend design, vendor management. Responsibilities shared.
REST APIs, Backend Web Development, Python, Containerisation (Docker + Swarm), Unit Testing, Dashboard Design
PostgreSQL, TensorFlow, HDF5, in-silico data, cardiac CT, GDPR
